Mir-30-P1a

MirGeneDB ID

Rno-Mir-30-P1a

Family name

MIR-30 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-30d

Paralogues

Rno-Mir-30-P1b Rno-Mir-30-P1d Rno-Mir-30-P2a Rno-Mir-30-P2b Rno-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr7: 109286472-109286533 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

UUUGUAGCUUGCUGUCAGAAAGUCUGUGUCUGUAAACAUCCCCGACUGGAAGCUGUAAGCCACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACUGGCUCUUCGCAUGCAUCUUUUGGACA

Get precursor sequence

Structure

        10         20         30        40        50        60 
UUUGUAGCUUGCUGUCA-   -|   U   UCU         CCC           GUAAGC 
                  GAA AGUC GUG   GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CAU   CGUUUGUAG   CUGACUUUCGA      A
ACAGGUUUUCUACGUACG   C^   U   CGU         A--           ACCGAC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-30-P1a_5p

mirBase accession

MIMAT0000807

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000807
TargetScanVert: rno-miR-30d-5p
miRDB: MIMAT0000807

Star sequence

Rno-Mir-30-P1a_3p*

mirBase accession

MIMAT0004722

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

Get sequence

Proposed targets

microrna.org: MIMAT0004722
TargetScanVert: rno-miR-30d-3p
miRDB: MIMAT0004722