MirGeneDB 3.0
MirGeneDB ID

Neu-Mir-30-P1a

Family name MIR-30 (all species)
Species Tammar Wallaby (Notamacropus eugenii)
MiRBase ID
Paralogues Neu-Mir-30-P1d  Neu-Mir-30-P2a  Neu-Mir-30-P2b  Neu-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028372415.1_mMacEug1.pri)		 CM051816.1: 104485511-104485572 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)		 Mir-30-P1a CM051816.1: 104485511-104485572 [+] UCSC Ensembl
Mir-30-P2a CM051816.1: 104491373-104491431 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
AGUUUGUAAUUGUCAACGAAAGUCUGUCGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAAUCACAAACGUCAUCACGUUA
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Structure
        10        20          30        40        50        60 
AGUUUGUAAUUGUCAACGAA--|   U  C  U         CCC           GUAAGA 
                      AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                      UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
AUUGCACUACUGCAAACACUAA^   C  U  U         A--           ACCGAC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Ce Fi Li Mi Mi Mi Mi Mi Ov Se Se Te Te Te
Mature sequence

Neu-Mir-30-P1a_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Neu-Mir-30-P1a_3p*
mirBase accessionNone
Sequence 
40- CUUUCAGUCAGAUGUUUGCUGC -62
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