MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-30-P1a

Family name MIR-30 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-30d
Paralogues Dre-Mir-30-P1b  Dre-Mir-30-P1d  Dre-Mir-30-P1o1  Dre-Mir-30-P2a  Dre-Mir-30-P2b  Dre-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr16: 25341450-25341514 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)		 Mir-30-P1a chr16: 25341450-25341514 [+] UCSC Ensembl
Mir-30-P2a chr16: 25341739-25341799 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
UGUAUAUGGGUAUAACUGGUUGUUCAUGCCUGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCUGUCAUCGUCCAGUUCUGUCGCCUUGUAUUACU
Get precursor sequence
Structure
        10             20        30        40        50        60   
UGUAUAUGGGUAUAACU-----| U  UUC   CCU          CC           GUGCUACG 
                      GG UG   AUG   GUAAACAUCC  GACUGGAAGCU        \
                      CC GC   UAC   CGUUUGUAGG  UUGACUUUCGA        C
UCAUUAUGUUCCGCUGUCUUGA^ U  ---   UGU          --           GCAAAAGG 
   120       110       100           90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-30-P1a_5p
mirBase accessionMIMAT0001806
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
Get sequence
Proposed targets TargetScanFish: dre-miR-30d
Star sequence

Dre-Mir-30-P1a_3p*
mirBase accessionNone
Sequence 
43- CUUUCAGUUGGAUGUUUGCUGU -65
Get sequence