MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-30e-2
Paralogues Dre-Mir-30-P1a  Dre-Mir-30-P1d  Dre-Mir-30-P1o1  Dre-Mir-30-P2a  Dre-Mir-30-P2b  Dre-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr13: 27795140-27795201 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1b)		 Mir-30-P1b chr13: 27795140-27795201 [+] UCSC Ensembl
Mir-30-P2b chr13: 27804077-27804137 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCAAAAAACAGCUGGCAGUACGGGCUACUGUAAACAUCCUUGACUGGAAGCUGGUGCACAUGAUGGAGCUUUCAGUCGGAUGUUUGCAGCAGCCAACUGCUGUUACUCUCGCCCAGAAAU
Get precursor sequence
Structure
        10         20         30        40        50        60 
GGGCAAAAAACAGCUGG-     CG-|   A            UU           GGUGCA 
                  CAGUA   GGCU CUGUAAACAUCC  GACUGGAAGCU      C
                  GUCGU   CCGA GACGUUUGUAGG  CUGACUUUCGA      A
UAAAGACCCGCUCUCAUU     CAA^   C            --           GGUAGU 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-30-P1b_5p
mirBase accessionMIMAT0001807
Sequence 
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
Proposed targets TargetScanFish: dre-miR-30e
Star sequence

Dre-Mir-30-P1b_3p*
mirBase accessionMIMAT0003402
Sequence 
40- CUUUCAGUCGGAUGUUUGCAGC -62
Get sequence