MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-30-P1b

Family name MIR-30 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-30a
Paralogues Mmu-Mir-30-P1a  Mmu-Mir-30-P1d  Mmu-Mir-30-P2a  Mmu-Mir-30-P2b  Mmu-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cja-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Eca-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Laf-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmr-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pab-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr1: 23272274-23272336 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1b)		 Mir-30-P1b chr1: 23272274-23272336 [+] UCSC Ensembl
Mir-30-P2b chr1: 23291714-23291775 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GAAGGCAUAUCAACGUUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAAAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCUACUGCCUCCAACUUCAAGGAGUAAU
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAAGGCAUAUCAACGUUGA--|    A   A            UC           GUGAAGC 
                     CAGUG GCG CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCAU CGU GACGUUUGUAGG  CUGACUUUCGG       C
UAAUGAGGAACUUCAACCUCC^    C   C            --           GUAAACA 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-30-P1b_5p
mirBase accessionMIMAT0000128
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000128
TargetScanVert: mmu-miR-30a-5p
miRDB: MIMAT0000128
Star sequence

Mmu-Mir-30-P1b_3p*
mirBase accessionMIMAT0000129
Sequence 
41- CUUUCAGUCGGAUGUUUGCAGC -63
Get sequence
Proposed targets microrna.org: MIMAT0000129
TargetScanVert: mmu-miR-30a-3p
miRDB: MIMAT0000129