Mir-30-P2a

MirGeneDB ID

Mmu-Mir-30-P2a

Family name

MIR-30 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-30b

Paralogues

Mmu-Mir-30-P1a Mmu-Mir-30-P1b Mmu-Mir-30-P1d Mmu-Mir-30-P2b Mmu-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr15: 68337431-68337490 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P2a chr15: 68337431-68337490 [-] UCSC Ensembl
Mir-30-P1a chr15: 68341217-68341278 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

AAGUCUCUCUCUAAGCCAAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUCAUACAUGCGUUGGCUGGGAUGUGGAUGUUUACGUCAGCUGUCUUGGAGUAUCCACCAGUUAACAU

Get precursor sequence

Structure

        10            20        30        40         50         
AAGUCUCUCUCUAAGCC----|  UUU     C            U   -       GUCAUA 
                     AAG   CAGUU AUGUAAACAUCC ACA CUCAGCU      C
                     UUC   GUCGA UGCAUUUGUAGG UGU GGGUCGG      A
UACAAUUGACCACCUAUGAGG^  U--     C            -   A       UUGCGU 
.       110       100          90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-30-P2a_5p

mirBase accession

MIMAT0000130

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000130
TargetScanVert: mmu-miR-30b-5p
miRDB: MIMAT0000130

Star sequence

Mmu-Mir-30-P2a_3p*

mirBase accession

MIMAT0004524

Sequence

38- CUGGGAUGUGGAUGUUUACGUC -60

Get sequence

Proposed targets

microrna.org: MIMAT0004524
TargetScanVert: mmu-miR-30b-3p
miRDB: MIMAT0004524