MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-30b
Paralogues Cpo-Mir-30-P1a  Cpo-Mir-30-P1b  Cpo-Mir-30-P1d  Cpo-Mir-30-P2b  Cpo-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_51: 2026508-2026567 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P2a)		 Mir-30-P1a scaffold_51: 2020362-2020423 [+] UCSC
Mir-30-P2a scaffold_51: 2026508-2026567 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AAGUUCAACUUUAAACCAAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUAAUAUAUGAAUUGGCUGGGAGGUGGGUGUUUACUUCAGCUGACUUGGAAUGUCAACCAGUUAACAU
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Structure
        10            20        30        40         50         
AAGUUCAACUUUAAACC----|  UU      CAU       U     A-       GUAAUA 
                     AAG  UCAGUU   GUAAACA CCUAC  CUCAGCU      U
                     UUC  AGUCGA   CAUUUGU GGGUG  GGGUCGG      A
UACAAUUGACCAACUGUAAGG^  --      CUU       -     GA       UUAAGU 
.       110       100          90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-30-P2a_5p
mirBase accessionMIMAT0046905
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Cpo-Mir-30-P2a_3p*
mirBase accessionMIMAT0046906
Sequence 
38- CUGGGAGGUGGGUGUUUACUUC -60
Get sequence