MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-30-P2a

Family name MIR-30 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-30b
Paralogues Rno-Mir-30-P1a  Rno-Mir-30-P1b  Rno-Mir-30-P1d  Rno-Mir-30-P2b  Rno-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 901814657: 125-184 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
AGGUCCCUCUUUAAGCCGAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUCAUACAUGAGUUGGCUGGGAUGUGGAUGUUUACGUCAGCUGUCUUGGAGUAUCCACCAGUUAACAU
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Structure
        10            20        30        40         50         
AGGUCCCUCUUUAAGCC----|  UUU     C            U   -       GUCAUA 
                     GAG   CAGUU AUGUAAACAUCC ACA CUCAGCU      C
                     UUC   GUCGA UGCAUUUGUAGG UGU GGGUCGG      A
UACAAUUGACCACCUAUGAGG^  U--     C            -   A       UUGAGU 
.       110       100          90        80         70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-30-P2a_5p
mirBase accessionMIMAT0000806
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
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Proposed targets microrna.org: MIMAT0000806
TargetScanVert: rno-miR-30b-5p
miRDB: MIMAT0000806
Star sequence

Rno-Mir-30-P2a_3p*
mirBase accessionMIMAT0004721
Sequence 
38- CUGGGAUGUGGAUGUUUACGUC -60
Get sequence
Proposed targets microrna.org: MIMAT0004721
TargetScanVert: rno-miR-30b-3p
miRDB: MIMAT0004721