MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-30b
Paralogues Tni-Mir-30-P1a  Tni-Mir-30-P1b  Tni-Mir-30-P1d  Tni-Mir-30-P2b  Tni-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
21: 5299014-5299077 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)
Mir-30-P1a 21: 5298839-5298898 [+] UCSC Ensembl
Mir-30-P2a 21: 5299014-5299077 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGGUCCUCGGCCGUUCGGGCUCAGAUGGUGUAAACAUCCUACACUCAGCUGUGAUCUUUUGCCGCAGAGGCUGAGAGAAGGUUGUUUACUUGAACUGGCUGGAAGUGACACGCUGGCGCGAA
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Structure
        10           20        30        40        50        60 
CCAGGUCCUCGGCCGUU---|G   U   AUGGU       U   ACA       GUGAUCUU 
                    C GGC CAG     GUAAACA CCU   CUCAGCU        U
                    G UCG GUC     CAUUUGU GGA   GAGUCGG        U
AAGCGCGGUCGCACAGUGAA^G   -   AAGUU       U   AGA       AGACGCCG 
  120       110       100         90        80        70
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-30-P2a_5p

mirBase accessionMIMAT0002948
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Co-mature sequence

Tni-Mir-30-P2a_3p

mirBase accessionNone
Sequence
42- CUGAGAGAAGGUUGUUUACUUG -64
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