MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-30b
Paralogues Ami-Mir-30-P1a  Ami-Mir-30-P1b  Ami-Mir-30-P1d  Ami-Mir-30-P2b  Ami-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017708043.1: 6765030-6765089 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P2a)
Mir-30-P2a NW_017708043.1: 6765030-6765089 [-] UCSC
Mir-30-P1a NW_017708043.1: 6771347-6771408 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUUCUUAUUGUUACACUGACUUUUAGUUCAUGUAAACAUCCUACACUCAGCUAUAACAACUGGAACGGCUGGGAGGUGGAUGUUUACUUCAACUGAUUUGAAAAGGCAGCCUUUCCGAAA
Get precursor sequence
Structure
        10        20          30        40         50         
AUUCUUAUUGUUACACUGACUU--|     CAU          U  A-       AUAACA 
                        UUAGUU   GUAAACAUCC AC  CUCAGCU      A
                        AGUCAA   CAUUUGUAGG UG  GGGUCGG      C
AAAGCCUUUCCGACGGAAAAGUUU^     CUU          -  GA       CAAGGU 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-30-P2a_5p

mirBase accessionMIMAT0038079
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
Star sequence

Ami-Mir-30-P2a_3p*

mirBase accessionMIMAT0038080
Sequence
38- CUGGGAGGUGGAUGUUUACUUC -60
Get sequence