MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-30c
Paralogues Gmo-Mir-30-P1a  Gmo-Mir-30-P1b  Gmo-Mir-30-P1d  Gmo-Mir-30-P2b  Gmo-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1709: 6950-7013 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)
Mir-30-P2a GeneScaffold_1709: 6950-7013 [-] UCSC Ensembl
Mir-30-P1a GeneScaffold_1709: 7206-7265 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGGACCCGGGGGUUCAGACCUCAGUUUAUGUAAACAUCCUACACUCAGCUGUAGCCACGUUGACCACAGGCUGAGAGAAGGCUGUUUACUUUAACUGUCUGAAGCGUGCACCCCAUGAAAAU
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Structure
        10             20        30        40        50        60 
GCAGGACCCGGGGGUUC-----|   CUC    UAU       U   ACA       GUAGCCAC 
                      AGAC   AGUU   GUAAACA CCU   CUCAGCU        G
                      UCUG   UCAA   CAUUUGU GGA   GAGUCGG        U
UAAAAGUACCCCACGUGCGAAG^   ---    UUU       C   AGA       ACACCAGU 
  120       110       100           90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-30-P2a_5p

mirBase accessionMIMAT0044142
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Gmo-Mir-30-P2a_3p*

mirBase accessionMIMAT0044143
Sequence
42- CUGAGAGAAGGCUGUUUACUUU -64
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