Mir-30-P2b

MirGeneDB ID

Gmo-Mir-30-P2b

Family name

MIR-30 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-30d

Paralogues

Gmo-Mir-30-P1a Gmo-Mir-30-P1b Gmo-Mir-30-P1d Gmo-Mir-30-P2a Gmo-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_109: 1149-1210 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2b)

Mir-30-P2b GeneScaffold_109: 1149-1210 [-] UCSC Ensembl
Mir-30-P1b GeneScaffold_109: 2960-3022 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

UAUGCCCACGGAUAUUCGAGUUCCGGGUAGUGUAAACAUCCUACACUUUCGGCGUCUGCCCUCAUGUGGCCGGGAGUGGGACUGUUUGCGCUGCCCGGCUCGGAACAACAUGGCUAGAUCUG

Get precursor sequence

Structure

        10            20        30         40        50        60 
UAUGCCCACGGAUAUUC----|  UU                -   UA    UU    GUCUGCC 
                     GAG  CCGGGUAGUGUAAACA UCC  CACU  CGGC       \
                     CUC  GGCCCGUCGCGUUUGU AGG  GUGA  GCCG       C
GUCUAGAUCGGUACAACAAGG^  --                C   --    GG    GUGUACU 
120       110       100          90        80          70