Mir-30-P1b

MirGeneDB ID

Gmo-Mir-30-P1b

Family name

MIR-30 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-30e-2

Paralogues

Gmo-Mir-30-P1a Gmo-Mir-30-P1d Gmo-Mir-30-P2a Gmo-Mir-30-P2b Gmo-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_109: 2960-3022 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P2b GeneScaffold_109: 1149-1210 [-] UCSC Ensembl
Mir-30-P1b GeneScaffold_109: 2960-3022 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CAGCUCAGGUCUUUUGGCAGUCGGGGCUACUGUAAACAUCCUUGACUGGAAGCUAGUGCUUUGUCCUGGAGCUUUCAGUCGGAUGUUUGCAGCAGCCAACUGCUAUAGUCCCAUGAUUAGAGC

Get precursor sequence

Structure

        10            20        30        40        50        60  
CAGCUCAGGUCUUUUGG----|   CGG    A            UU           AGUGCUU 
                     CAGU   GGCU CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCA   CCGA GACGUUUGUAGG  CUGACUUUCGA       U
CGAGAUUAGUACCCUGAUAUC^   A--    C            --           GGUCCUG 
 120       110       100          90          80        70