MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-30a
Paralogues Rno-Mir-30-P1a  Rno-Mir-30-P1d  Rno-Mir-30-P2a  Rno-Mir-30-P2b  Rno-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pbv-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr9: 29542640-29542702 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1b)
Mir-30-P1b chr9: 29542640-29542702 [+] UCSC Ensembl
Mir-30-P2b chr9: 29562389-29562450 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGACAUAUCAAUGUUGACAGUGAGCAACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAAAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCUACUGUCUCCAACUUCAAGGAGCAAU
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAAGACAUAUCAAUGUU--|      A   A            UC           GUGAAGC 
                   GACAGUG GCA CUGUAAACAUCC  GACUGGAAGCU       \
                   CUGUCAU CGU GACGUUUGUAGG  CUGACUUUCGG       C
UAACGAGGAACUUCAACCU^      C   C            --           GUAAACA 
 120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-30-P1b_5p

mirBase accessionMIMAT0000808
Sequence
0- UGUAAACAUCCUCGACUGGAAGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000808
TargetScanVert: rno-miR-30a-5p
miRDB: MIMAT0000808
Star sequence

Rno-Mir-30-P1b_3p*

mirBase accessionMIMAT0000809
Sequence
41- CUUUCAGUCGGAUGUUUGCAGC -63
Get sequence
Proposed targets microrna.org: MIMAT0000809
TargetScanVert: rno-miR-30a-3p
miRDB: MIMAT0000809