Mir-30-P1d

MirGeneDB ID

Rno-Mir-30-P1d

Family name

MIR-30 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-30e

Paralogues

Rno-Mir-30-P1a Rno-Mir-30-P1b Rno-Mir-30-P2a Rno-Mir-30-P2b Rno-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr5: 139702884-139702947 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1d)

Mir-30-P2d chr5: 139699889-139699949 [-] UCSC Ensembl
Mir-30-P1d chr5: 139702884-139702947 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CUCUUUAUUUUUCAGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUGAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACAGUCGUCCCUGGCUGCG

Get precursor sequence

Structure

        10            20        30        40        50        60  
CUCUUUAUUUUUCAGGG----|     UU  UA            UU           GUAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGA       U
GCGUCGGUCCCUGCUGACACC^     --  GC            --           GGAGAGU 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-30-P1d_5p

mirBase accession

MIMAT0000805

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000805
TargetScanVert: rno-miR-30e-5p
miRDB: MIMAT0000805

Star sequence

Rno-Mir-30-P1d_3p*

mirBase accession

MIMAT0004720

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

Get sequence

Proposed targets

microrna.org: MIMAT0004720
TargetScanVert: rno-miR-30e-3p
miRDB: MIMAT0004720