MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-30-P1d

Family name MIR-30 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-30e
Paralogues Gga-Mir-30-P1a  Gga-Mir-30-P1b  Gga-Mir-30-P2a  Gga-Mir-30-P2b  Gga-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cja-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Eca-Mir-30-P1d  Ete-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Laf-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmr-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Neu-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pab-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 23: 5078861-5078924 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1d)		 Mir-30-P1d 23: 5078861-5078924 [+] UCSC Ensembl
Mir-30-P2d 23: 5080082-5080142 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
UCCCGCACCCUUCGGGGCAGUCAUCGCUGCUGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACAGCUGCAGGCUGCUGCAGUCACCUGGGUGCUGC
Get precursor sequence
Structure
        10            20        30        40        50        60  
UCCCGCACCCUUCGGGG----|    AUC  U             UU           GUGAGGU 
                     CAGUC   GC GCUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGG   CG CGACAUUUGUAGG  CUGACUUUCGG       U
CGUCGUGGGUCCACUGACGUC^    A--  U             --           GGGCGAC 
  120       110       100          90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-30-P1d_5p
mirBase accessionMIMAT0001177
Sequence 
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
Proposed targets TargetScanVert: gga-miR-30e-5p
miRDB: MIMAT0001177
Star sequence

Gga-Mir-30-P1d_3p*
mirBase accessionMIMAT0026538
Sequence 
42- CUUUCAGUCGGAUGUUUACAGC -64
Get sequence
Proposed targets TargetScanVert: gga-miR-30e-3p
miRDB: MIMAT0026538