MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-30a
Paralogues Tgu-Mir-30-P1a  Tgu-Mir-30-P1b  Tgu-Mir-30-P2a  Tgu-Mir-30-P2b  Tgu-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
23: 2003629-2003691 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGUAUCUUUUGGGGCAGUCAGUGCCUCUGUAAACAUCCUUGACUGGAAGCUGGAAGGGCUGGAAGGAGCUUUCAGUCGGAUGUUUACAGCAGCAGGCUGCUGCUCUCAGCUCAGCAUUUU
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Structure
        10         20          30        40        50        60  
UUUUGUAUCUUUUGGGG-   U    --| CU            UU           GGAAGGG 
                  CAG CAGU  GC  CUGUAAACAUCC  GACUGGAAGCU       \
                  GUC GUCG  CG  GACAUUUGUAGG  CUGACUUUCGA       C
UUUUACGACUCGACUCUC   -    GA^ AC            --           GGAAGGU 
 120       110        100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-30-P1d_5p

mirBase accessionMIMAT0014637
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Star sequence

Tgu-Mir-30-P1d_3p*

mirBase accessionMIMAT0014535
Sequence
41- CUUUCAGUCGGAUGUUUACAGC -63
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