MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-30-P1b2

Family name MIR-30 (all species)
Seed GUAAACA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-30a
Paralogues Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xla-Mir-30-P1b1  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xtr-Mir-30-P1b 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030733.1: 74416880-74416941 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUAGAAACUGCUGCUGACAGUGUGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAACAGUUGAAGGGCUUUCAGUCAGAUGUUUGCAGCUGCCAACUGCCUUCAUCUUCAAGAACUUCU
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Structure
        10          20        30        40        50        60 
GGCUAGAAACUGCUGCUGA--|   GU   A           CUC           GUGAAC 
                     CAGU  GCG CUGUAAACAUC   GACUGGAAGCU      A
                     GUCA  CGU GACGUUUGUAG   CUGACUUUCGG      G
UCUUCAAGAACUUCUACUUCC^   AC   C           A--           GAAGUU 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-30-P1b2_5p
mirBase accessionMIMAT0046568
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCU -24
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Star sequence

Xla-Mir-30-P1b2_3p*
mirBase accessionMIMAT0046569
Sequence 
40- CUUUCAGUCAGAUGUUUGCAGC -62
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