Mir-30-P2b1

MirGeneDB ID

Xla-Mir-30-P2b1

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xla-Mir-30-P2b2 Xla-Mir-30-P2d1 Xla-Mir-30-P2d2

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xtr-Mir-30-P2b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NW_016694819.1: 199480-199539 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGACAUGCUUUCCUUCUGAGAGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGAAAUACAAAGCUGGGGGAAGGCUGUUUACUCUCUCUGCCUCUGAAAGCAGCUGAAAGGAAGA

Get precursor sequence

Structure

        10          20        30        40        50        60
UGACAUGCUUUCCUUCUG--|   A    UACU       U   ACA         GUGGA 
                    AGAG CAGA    GUAAACA CCU   CUCUCAGCU     A
                    UCUC GUCU    CAUUUGU GGA   GGGGGUCGA     A
AGAAGGAAAGUCGACGAAAG^   C    CUCU       C   A--         AACAU 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	He	Re	St	St	St	St

Mature sequence

Xla-Mir-30-P2b1_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Xla-Mir-30-P2b1_3p*

mirBase accession

None

Sequence

38- CUGGGGGAAGGCUGUUUACUCU -60

Get sequence