MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-30-P2b

Family name MIR-30 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-30c-2
Paralogues Eca-Mir-30-P1a  Eca-Mir-30-P1b  Eca-Mir-30-P1d  Eca-Mir-30-P2a  Eca-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cja-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Laf-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmr-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Neu-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pab-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009167.1: 63868913-63868974 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2b)		 Mir-30-P2b CM009167.1: 63868913-63868974 [-] UCSC Ensembl
Mir-30-P1b CM009167.1: 63894235-63894290 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
CCACCCUAGAGAGCACUGAGUGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGAAAGUGAGAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAACUAAAGAGAAAU
Get precursor sequence
Structure
        10            20        30        40        50        60 
CCACCCUAGAGAGCACU----|  UGA    UACU       U   ACA         GUGGAA 
                     GAG   CAGA    GUAAACA CCU   CUCUCAGCU      A
                     UUC   GUCU    CAUUUGU GGA   GAGGGUCGA      G
UAAAGAGAAAUCAACUAAAGG^  C--    CUCU       C   A--         AAGAGU 
120       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-30-P2b_5p
mirBase accessionMIMAT0012915
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
Star sequence

Eca-Mir-30-P2b_3p*
mirBase accessionNone
Sequence 
40- CUGGGAGAAGGCUGUUUACUCU -62
Get sequence