MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-30-P1a  Gja-Mir-30-P1b  Gja-Mir-30-P1d  Gja-Mir-30-P2a  Gja-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015172084.1: 149198-149257 [+]
Precursor
(pre-Mir +30nt flank)
UGAUCCAGGACAGUGCUAAGUGACAGGUAGUGUAAACAUCCUACACUCUCAGCUGUGGGGAAAAAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAACUGCUGAAGCAGGCA
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Structure
        10        20          30        40        50        60
UGAUCCAGGACAGUGCUAAGUGA--|  GU  U       U   ACA         GUGGG 
                         CAG  AG GUAAACA CCU   CUCUCAGCU     G
                         GUC  UC CAUUUGU GGA   GAGGGUCGA     A
ACGGACGAAGUCGUCAAAAGGUUCC^  UC  U       C   A--         AAAAA 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Gja-Mir-30-P2b_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Gja-Mir-30-P2b_3p*
mirBase accessionNone
Sequence 
38- CUGGGAGAAGGCUGUUUACUCU -60
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