MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-30-P1b

Family name MIR-30 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-30-P1a  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cmi-Mir-30-P2a  Cmi-Mir-30-P2b  Cmi-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cja-Mir-30-P1b  Cli-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Eca-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Laf-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmr-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pab-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635974.1: 369842-369903 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1b)		 Mir-30-P1b KI635974.1: 369842-369903 [+] UCSC Ensembl
Mir-30-P2b KI635974.1: 383389-383450 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GGGGCUGGGCUGGUCGGCAAUGUGAGCUACUGUAAACAUCCUCGACUGGAAGCUGUGAGGGGCCAAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCGAUUGCCAAGGACUGCUGGACGGCAG
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Structure
        10            20        30        40        50        60 
GGGGCUGGGCUGGUCGG----|   G  A  UA            UC           GUGAGG 
                     CAAU UG GC  CUGUAAACAUCC  GACUGGAAGCU      G
                     GUUA GC CG  GACGUUUGUAGG  CUGACUUUCGG      G
GACGGCAGGUCGUCAGGAACC^   -  -  UC            --           GUAACC 
120       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-30-P1b_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCU -24
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Star sequence

Cmi-Mir-30-P1b_3p*
mirBase accessionNone
Sequence 
40- CUUUCAGUCGGAUGUUUGCAGC -62
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