Mir-30-P1b

MirGeneDB ID

Mun-Mir-30-P1b

Family name

MIR-30 (all species)

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-30-P1a Mun-Mir-30-P1d Mun-Mir-30-P2a Mun-Mir-30-P2b Mun-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_901765095.2_aMicUni1.2)

LR594634.1: 476611461-476611524 [-]

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P2b LR594634.1: 476571375-476571436 [-]
Mir-30-P1b LR594634.1: 476611461-476611524 [-]

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

AUGGUGGUAUUGCUGUUGACAGUGAGUGACUGUAAACAUCCUCGACUGGAAGCUGUGAAACAGCAGAUGUAGCUUUCAGUCGGAUGUUUGCAGCUGCCAACUGCCACAGGCUUCAAGAAACAUU

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Structure

        10          20        30        40        50        60  
AUGGUGGUAUUGCUGUU--|A    GA  GA            UC           GUGAAAC 
                   G CAGU  GU  CUGUAAACAUCC  GACUGGAAGCU       A
                   C GUCA  CG  GACGUUUGUAGG  CUGACUUUCGA       G
UUACAAAGAACUUCGGACA^C    AC  UC            --           UGUAGAC 
  120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Mun-Mir-30-P1b_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

Get sequence

Star sequence

Mun-Mir-30-P1b_3p*

mirBase accession

None

Sequence

42- CUUUCAGUCGGAUGUUUGCAGC -64

Get sequence