| MirGeneDB ID | Lch-Mir-30-P1b |
|---|---|
| Family name | MIR-30 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-30-P1a Lch-Mir-30-P1d Lch-Mir-30-P2a Lch-Mir-30-P2b Lch-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH129264.1: 106248-106311 [+] Ensembl |
| Seed | GUAAACA |
| Precursor (pre-Mir +30nt flank) |
GAAUAACUGCUGCUGUUGACAGUGGGUGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGUGGCUUUCAGUCGGAUGUUUGCUGCUGCCAGCUGCCACGGACUUCAAGAAGCUGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GAAUAACUGCUGCUGUU--|A G ACU UC GUGAAGC G CAGU GGUG GUAAACAUCC GACUGGAAGCU A C GUCG CCGU CGUUUGUAGG CUGACUUUCGG G AGUCGAAGAACUUCAGGCA^C A CGU -- UGUAGAC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-30-P1b_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCUCGACUGGAAGCU -24
Get sequence
|
| Star sequence | Lch-Mir-30-P1b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
42- CUUUCAGUCGGAUGUUUGCUGC -64
Get sequence
|
