| MirGeneDB ID | Lch-Mir-30-P2a |
|---|---|
| Family name | MIR-30 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-30-P1a Lch-Mir-30-P1b Lch-Mir-30-P1d Lch-Mir-30-P2b Lch-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH131061.1: 48307-48366 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-30-P2a) |
Mir-30-P1a
JH131061.1: 46578-46640 [+]
Ensembl
Mir-30-P2a JH131061.1: 48307-48366 [+] Ensembl |
| Seed | GUAAACA |
| Precursor (pre-Mir +30nt flank) |
CUGGAUAAUGUGAAACCAAGUUCCAGUCCAUGUAAACAUCCUACACUCAGCUGUAACACAGGGAAAGACUGGGAGAAGGGUGUUUACUUCGGCUGACUUGGAUGUCCUUAAUGCUCGAGGGet precursor sequence |
| Structure | 10 20 30 40 50 CUGGAUAAUGUGAAACC----| UC CAU ACA - GUAACA AAGU CAGUC GUAAACAUCCU CUCAG CU \ UUCA GUCGG CAUUUGUGGGA GGGUC GA C GGAGCUCGUAAUUCCUGUAGG^ -- CUU AGA A AAGGGA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-30-P2a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
|
| Star sequence | Lch-Mir-30-P2a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- CUGGGAGAAGGGUGUUUACUUC -60
Get sequence
|
