Mir-30-P2a

MirGeneDB ID

Xtr-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-30b

Paralogues

Xtr-Mir-30-P1a Xtr-Mir-30-P1b Xtr-Mir-30-P1d Xtr-Mir-30-P2b Xtr-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr6: 126125385-126125444 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P1a chr6: 126121139-126121201 [+] UCSC Ensembl
Mir-30-P2a chr6: 126125385-126125444 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUCGUGCCCAGACGCUCCGUAUUAGUCUAUGUAAACAUCCUACACUCAGCUCGUAUGUAUAACCUGACUGGGUGGGGGGUGUUUGCCUCGACUGAUCUGGAAACUCCUCCAAUGGAAUG

Get precursor sequence

Structure

        10          20        30        40        50         
UCUCGUGCCCAGACGCU--|  U       UAU          UA       CUCGUAUG 
                   CCG AUUAGUC   GUAAACAUCC  CACUCAG        U
                   GGU UAGUCAG   CGUUUGUGGG  GUGGGUC        A
GUAAGGUAACCUCCUCAAA^  C       CUC          GG       AGUCCAAU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Em	Em	Em	Em	He

Mature sequence

Xtr-Mir-30-P2a_5p

mirBase accession

MIMAT0003576

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-30b

Star sequence

Xtr-Mir-30-P2a_3p*

mirBase accession

None

Sequence

38- CUGGGUGGGGGGUGUUUGCCUC -60

Get sequence