Mir-30-P2a

MirGeneDB ID

Neu-Mir-30-P2a

Family name

MIR-30 (all species)

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-30-P1a Neu-Mir-30-P1d Neu-Mir-30-P2b Neu-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051816.1: 104491373-104491431 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P1a CM051816.1: 104485511-104485572 [+] UCSC Ensembl
Mir-30-P2a CM051816.1: 104491373-104491431 [+] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

AAGCUGGUCAUUAAACUGAGUUCCAGUUCAUGUAAACAUCCUACACUCAGCUGUAACACAUGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAACAGCCUAUUAACAU

Get precursor sequence

Structure

        10            20        30        40         50         
AAGCUGGUCAUUAAACU----|   UC     CAU          U  A-       GUAACA 
                     GAGU  CAGUU   GUAAACAUCC AC  CUCAGCU      \
                     UUCA  GUCGA   CAUUUGUAGG UG  GGGUCGG      C
UACAAUUAUCCGACAAUAAGG^   --     CUU          -  GA       UUAGUA 
       110       100          90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-30-P2a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Star sequence

Neu-Mir-30-P2a_3p*

mirBase accession

None

Sequence

37- CUGGGAGGUGGAUGUUUACUUC -59

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