MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-30-P2a

Family name MIR-30 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-30-P1a  Loc-Mir-30-P1b  Loc-Mir-30-P1d  Loc-Mir-30-P2b  Loc-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG11: 8164573-8164634 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)		 Mir-30-P2a LG11: 8164573-8164634 [-] Ensembl
Mir-30-P1a LG11: 8165237-8165299 [-] Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GAAUUGCAGGUGAAUCCAAGUCAUAGUUAGUGUAAACAUCCUACACUCAGCUGUAACUUCAAAGUAAAGGCUGGGAGAAGGGUGUUUACUUUGACUAGUUUGGAAGAACGUUUAUGCAGCAA
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Structure
        10        20          30        40        50        60
GAAUUGCAGGUGAAUCCAAGUCA--|      U           ACA       GUAACUU 
                         UAGUUAG GUAAACAUCCU   CUCAGCU       C
                         AUCAGUU CAUUUGUGGGA   GGGUCGG       A
AACGACGUAUUUGCAAGAAGGUUUG^      U           AGA       AAAUGAA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-30-P2a_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Loc-Mir-30-P2a_3p*
mirBase accessionNone
Sequence 
40- CUGGGAGAAGGGUGUUUACUUU -62
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