MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-30-P1a  Loc-Mir-30-P1b  Loc-Mir-30-P1d  Loc-Mir-30-P2b  Loc-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG11: 8164573-8164634 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUUGCAGGUGAAUCCAAGUCAUAGUUAGUGUAAACAUCCUACACUCAGCUGUAACUUCAAAGUAAAGGCUGGGAGAAGGGUGUUUACUUUGACUAGUUUGGAAGAACGUUUAUGCAGCAA
Get precursor sequence
Structure
        10        20          30        40        50        60
GAAUUGCAGGUGAAUCCAAGUCA--|      U           ACA       GUAACUU 
                         UAGUUAG GUAAACAUCCU   CUCAGCU       C
                         AUCAGUU CAUUUGUGGGA   GGGUCGG       A
AACGACGUAUUUGCAAGAAGGUUUG^      U           AGA       AAAUGAA 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-30-P2a_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
Star sequence

Loc-Mir-30-P2a_3p*

mirBase accessionNone
Sequence
40- CUGGGAGAAGGGUGUUUACUUU -62
Get sequence