MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-30c-1
Paralogues Cpo-Mir-30-P1a  Cpo-Mir-30-P1b  Cpo-Mir-30-P1d  Cpo-Mir-30-P2a  Cpo-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_180: 170974-171034 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P2d)		 Mir-30-P1d scaffold_180: 168140-168203 [+] UCSC
Mir-30-P2d scaffold_180: 170974-171034 [+] UCSC
Precursor
(pre-Mir +30nt flank)
ACCUCUAGGCUGUCACCAUGUUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCGAGGUAGCUGGGAGAGGGCUGUUUACUCCUUCUGCCAUGGAAAACGUCAGCUGAUGAAG
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Structure
        10            20        30        40        50        60 
ACCUCUAGGCUGUCACC----|  UU    UGUGU       U   ACA         GUGAGC 
                     AUG  GUAG     GUAAACA CCU   CUCUCAGCU      \
                     UAC  CGUC     CAUUUGU GGG   GAGGGUCGA      U
GAAGUAGUCGACUGCAAAAGG^  --    UUCCU       C   A--         UGGAGC 
 .       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-30-P2d_5p
mirBase accessionMIMAT0046907
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Cpo-Mir-30-P2d_3p*
mirBase accessionMIMAT0046908
Sequence 
39- CUGGGAGAGGGCUGUUUACUCC -61
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