MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-30-P2d

Family name MIR-30 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-30c
Paralogues Bta-Mir-30-P1a  Bta-Mir-30-P1b  Bta-Mir-30-P1d  Bta-Mir-30-P2a  Bta-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Cfa-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Eca-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037330.1: 105457765-105457825 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2d)		 Mir-30-P2d NC_037330.1: 105457765-105457825 [-] UCSC Ensembl
Mir-30-P1d NC_037330.1: 105460892-105460955 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
ACCCUCAGACUGUAACCAUGCCGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCGAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAACGUCUGCUGAAGAAG
Get precursor sequence
Structure
        10        20           30        40        50        60 
ACCCUCAGACUGUAACCAUG  ---|   UGUGU       U   ACA         GUGAGC 
                    CC   GUAG     GUAAACA CCU   CUCUCAGCU      \
                    GG   CGUC     CAUUUGU GGG   GAGGGUCGG      U
GAAGAAGUCGUCUGCAAAA-  UAC^   UUCCU       U   A--         UGGAGC 
 .       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-30-P2d_5p
mirBase accessionMIMAT0003850
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Proposed targets TargetScanVert: bta-miR-30c
Star sequence

Bta-Mir-30-P2d_3p*
mirBase accessionNone
Sequence 
39- CUGGGAGAGGGUUGUUUACUCC -61
Get sequence