MirGeneDB 2.1
MirGeneDB ID

Pbv-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-30d
Paralogues Pbv-Mir-30-P1b  Pbv-Mir-30-P1d  Pbv-Mir-30-P2a  Pbv-Mir-30-P2b  Pbv-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)		 KE956868.1: 129081-129137 [-]
Clustered miRNAs
(< 50kb from Mir-30-P1a)		 Mir-30-P2a KE956868.1: 127459-127518 [-]
Mir-30-P1a KE956868.1: 129081-129137 [-]
Precursor
(pre-Mir +30nt flank)
CCCUGUUCCCAGAGGAUGGUAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGGAAAAUGUAGCUUUCAGUCCGAUGUUUGCUGCCGCCGGCUAUUCAUGAACAGCGCUGGAAGG
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Structure
        10          20        30        40        50         
CCCUGUUCCCAGAGGAU--|      U  U  U         CCC           GGAA 
                   GGUAGUC GU GU GUAAACAUC   GACUGGAAGCU    \
                   UUAUCGG CG CG CGUUUGUAG   CUGACUUUCGA    A
GGAAGGUCGCGACAAGUAC^      C  C  U         C--           UGUA 
     110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pbv-Mir-30-P1a_5p
mirBase accessionMIMAT0038876
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Pbv-Mir-30-P1a_3p*
mirBase accessionMIMAT0038877
Sequence 
35- CUUUCAGUCCGAUGUUUGCUGC -57
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