Mir-144

MirGeneDB ID

Tni-Mir-144

Family name

MIR-144 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-144

Paralogues

Orthologues

Aca-Mir-144-v1 Ami-Mir-144 Bta-Mir-144-v1 Cfa-Mir-144-v1 Cja-Mir-144-v1 Cli-Mir-144-v1 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v1 Dno-Mir-144 Dre-Mir-144-v1 Ebu-Mir-144-v1 Eca-Mir-144-v1 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gmo-Mir-144-v1 Hsa-Mir-144-v1 Laf-Mir-144 Lch-Mir-144 Loc-Mir-144-v1 Mal-Mir-144-v1 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Mmu-Mir-144-v1 Mun-Mir-144-v1 Neu-Mir-144-v1 Oan-Mir-144 Ocu-Mir-144-v1 Pab-Mir-144-v1 Pbv-Mir-144 Pma-Mir-144 Rno-Mir-144-v1 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Xla-Mir-144-P1-v1 Xla-Mir-144-P2-v1 Xtr-Mir-144

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

7: 2925543-2925603 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-144)

Mir-451 7: 2925418-2925460 [-] UCSC Ensembl
Mir-144 7: 2925543-2925603 [-] UCSC Ensembl

Seed

ACAGUAU

Precursor
(pre-Mir +30nt flank)

CCACCAGGCGCUGUGUCUUGUGCCCUGGACAGGAUAUCAUCUUAUACUGUAAGUUUAAUAAAGUGACACUACAGUAUAGAUGAUGUACUAUCCAGGGCUUCAUUCCUCCUCCGGCUCCAUC

Get precursor sequence

Structure

        10        20          30        40        50        60
CCACCAGGCGCUGUGUCUUGU--|       C  G         U        AGUUUAAU 
                       GCCCUGGA AG AUAUCAUCU AUACUGUA        A
                       CGGGACCU UC UGUAGUAGA UAUGACAU        A
CUACCUCGGCCUCCUCCUUACUU^       A  A         -        CACAGUGA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-144_5p*

mirBase accession

None

Sequence

0- AGGAUAUCAUCUUAUACUGUAAG -23

Get sequence

Mature sequence

Tni-Mir-144_3p

mirBase accession

MIMAT0003021

Sequence

39- UACAGUAUAGAUGAUGUACUAU -61

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