| MirGeneDB ID | Spt-Mir-144 |
|---|---|
| Family name | MIR-144 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-144-v1 Ami-Mir-144 Bta-Mir-144-v1 Cfa-Mir-144-v1 Cja-Mir-144-v1 Cli-Mir-144-v1 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v1 Dno-Mir-144 Dre-Mir-144-v1 Ebu-Mir-144-v1 Eca-Mir-144-v1 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gmo-Mir-144-v1 Hsa-Mir-144-v1 Laf-Mir-144 Lch-Mir-144 Loc-Mir-144-v1 Mal-Mir-144-v1 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Mmu-Mir-144-v1 Mun-Mir-144-v1 Neu-Mir-144-v1 Oan-Mir-144 Ocu-Mir-144-v1 Pab-Mir-144-v1 Pbv-Mir-144 Pma-Mir-144 Rno-Mir-144-v1 Sha-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Tni-Mir-144 Xla-Mir-144-P1-v1 Xla-Mir-144-P2-v1 Xtr-Mir-144 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01008384.1: 2358679-2358736 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-144) |
Mir-144
QEPC01008384.1: 2358679-2358736 [+]
UCSC
Ensembl
Mir-451 QEPC01008384.1: 2359109-2359150 [+] UCSC Ensembl |
| Seed | GAUAUCA |
| Precursor (pre-Mir +30nt flank) |
GCAGGAAGUGCUGCCAGCAGGCUUUGGGCAGGAUAUCAUCCUAUACUGUAAGUUAGCUCUGAGACACUACAGUAUAGAUGAUGUACUACCCUGAGCUGCACUGCCACCGCAUGGAGCCGet precursor sequence |
| Structure | 10 20 30 40 50 GCAGGAAGUGCUGCCAGCA--| U C G C A UAGCU GGCUU GGG AG AUAUCAUC UAUACUGUA GU C UCGAG CCC UC UGUAGUAG AUAUGACAU CA U CCGAGGUACGCCACCGUCACG^ U A A - - CAGAG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-144_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GGAUAUCAUCCUAUACUGUAAGU -23
Get sequence
|
| Co-mature sequence | Spt-Mir-144_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- CUACAGUAUAGAUGAUGUACUA -58
Get sequence
|
