MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-144-v1

Family name MIR-144 (all species)
Seed GAUAUCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-144
Paralogues Rno-Mir-144-v2 
Orthologues Aca-Mir-144-v1  Ami-Mir-144  Bta-Mir-144-v1  Cfa-Mir-144-v1  Cli-Mir-144-v1  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Dno-Mir-144  Dre-Mir-144-v1  Ebu-Mir-144-v1  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gmo-Mir-144-v1  Hsa-Mir-144-v1  Lch-Mir-144  Loc-Mir-144-v1  Mal-Mir-144-v1  Mdo-Mir-144  Mml-Mir-144  Mmu-Mir-144-v1  Mun-Mir-144-v1  Oan-Mir-144  Ocu-Mir-144-v1  Pbv-Mir-144  Pma-Mir-144  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr10: 65291378-65291435 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v1)		 Mir-451 chr10: 65291218-65291259 [-] UCSC Ensembl
Mir-144-v1 chr10: 65291378-65291435 [-] UCSC Ensembl
Mir-144-v2 chr10: 65291378-65291435 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGCUCCUCCUCCUCCAGGGCCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGUACCCCAAGACUAGAGCCUGCCU
Get precursor sequence
Structure
        10        20          30        40        50         
GCUGCUCCUCCUCCUCCA   --|  U      G        A         AGUUUGUG 
                  GGG  CCU GGCUGG AUAUCAUC UAUACUGUA        \
                  CCC  GGG CUGAUC UGUAGUAG AUAUGACAU        A
UCCGUCCGAGAUCAGAAC   AU^  U      A        -         CACAGAGU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-144-v1_5p
mirBase accessionMIMAT0017130
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
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Proposed targets TargetScanVert: rno-miR-144-5p
miRDB: MIMAT0017130
Co-mature sequence

Rno-Mir-144-v1_3p
mirBase accessionMIMAT0000850
Sequence 
37- UACAGUAUAGAUGAUGUACUA -58
Get sequence
Proposed targets microrna.org: MIMAT0000850
TargetScanVert: rno-miR-144-3p
miRDB: MIMAT0000850