MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-144

Family name MIR-144 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-144-v1  Ami-Mir-144  Bta-Mir-144-v1  Cfa-Mir-144-v1  Cja-Mir-144-v1  Cli-Mir-144-v1  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Dno-Mir-144  Dre-Mir-144-v1  Ebu-Mir-144-v1  Eca-Mir-144-v1  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gmo-Mir-144-v1  Hsa-Mir-144-v1  Laf-Mir-144  Lch-Mir-144  Mal-Mir-144-v1  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mun-Mir-144-v1  Neu-Mir-144-v1  Oan-Mir-144  Ocu-Mir-144-v1  Pab-Mir-144-v1  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG22: 3766309-3766367 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v1)		 Mir-144-v1 LG22: 3766309-3766367 [+] Ensembl
Mir-144-v2 LG22: 3766309-3766367 [+] Ensembl
Mir-451 LG22: 3766452-3766494 [+] Ensembl
Variant

Loc-Mir-144-v1
Seed ACAGUAU
Precursor
(pre-Mir +30nt flank)		 
GAUUUUCUGAACAGGCUUGUACUCUGGACAGGAUAUCAUCAUAUACUGUAAGUUCGUUAUAGAGACACUACAGUAUAGAUGAUGUACUAUCCAGGGUUUCAUCCUCCUUCUGGACAAAU
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Structure
        10         20         30        40        50         
GAUUUUCUGAACAGGCU-  U-|       C  G        A         AGUUCGUU 
                  UG  ACUCUGGA AG AUAUCAUC UAUACUGUA        A
                  AC  UGGGACCU UC UGUAGUAG AUAUGACAU        U
UAAACAGGUCUUCCUCCU  UU^       A  A        -         CACAGAGA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-144-v1_5p*
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
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Mature sequence

Loc-Mir-144-v1_3p
mirBase accessionNone
Sequence 
38- UACAGUAUAGAUGAUGUACUA -59
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Variant

Loc-Mir-144-v2
Seed UACAGUA
Precursor
(pre-Mir +30nt flank)		 
GAUUUUCUGAACAGGCUUGUACUCUGGACAGGAUAUCAUCAUAUACUGUAAGUUCGUUAUAGAGACACUACAGUAUAGAUGAUGUACUAUCCAGGGUUUCAUCCUCCUUCUGGACAAAU
Get precursor sequence
Structure
        10         20         30        40        50          
GAUUUUCUGAACAGGCU-  U-|       C  G        A         A  UCGUUA 
                  UG  ACUCUGGA AG AUAUCAUC UAUACUGUA GU      \
                  AC  UGGGACCU UC UGUAGUAG AUAUGACAU CA      U
UAAACAGGUCUUCCUCCU  UU^       A  A        -         -  CAGAGA 
       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-144-v2_5p*
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Mature sequence

Loc-Mir-144-v2_3p
mirBase accessionNone
Sequence 
37- CUACAGUAUAGAUGAUGUACUA -59
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