MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-144

Family name MIR-144 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-144
Paralogues
Orthologues Aca-Mir-144-v1  Ami-Mir-144  Bta-Mir-144-v1  Cfa-Mir-144-v1  Cja-Mir-144-v1  Cli-Mir-144-v1  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Dno-Mir-144  Ebu-Mir-144-v1  Eca-Mir-144-v1  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gmo-Mir-144-v1  Hsa-Mir-144-v1  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v1  Mal-Mir-144-v1  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mun-Mir-144-v1  Neu-Mir-144-v1  Oan-Mir-144  Ocu-Mir-144-v1  Pab-Mir-144-v1  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr5: 42272092-42272150 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v1)		 Mir-451 chr5: 42271979-42272020 [-] UCSC Ensembl
Mir-144-v1 chr5: 42272092-42272150 [-] UCSC Ensembl
Mir-144-v2 chr5: 42272092-42272150 [-] UCSC Ensembl
Variant

Dre-Mir-144-v1
Seed ACAGUAU
Precursor
(pre-Mir +30nt flank)		 
CUUGAUUGUUUUAAUCUUGCUCUCUAGACAGGAUAUCAUCGUAUACUGUAAGUUCAUUAUUGAGACACUACAGUAUAGAUGAUGUACUAUCCAGGGGGUCAACGAGCCUCUGACGGUUU
Get precursor sequence
Structure
        10          20        30        40        50         
CUUGAUUGUUUUAAUCUU--|      A  C  G        G         AGUUCAUU 
                    GCUCUCU GA AG AUAUCAUC UAUACUGUA        A
                    UGGGGGA CU UC UGUAGUAG AUAUGACAU        U
UUUGGCAGUCUCCGAGCAAC^      C  A  A        -         CACAGAGU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-144-v1_5p*
mirBase accessionMIMAT0031975
Sequence 
0- GGAUAUCAUCGUAUACUGUAAG -22
Get sequence
Mature sequence

Dre-Mir-144-v1_3p
mirBase accessionMIMAT0001841
Sequence 
38- UACAGUAUAGAUGAUGUACUA -59
Get sequence
Proposed targets TargetScanFish: dre-miR-144
Variant

Dre-Mir-144-v2
Seed UACAGUA
Precursor
(pre-Mir +30nt flank)		 
CUUGAUUGUUUUAAUCUUGCUCUCUAGACAGGAUAUCAUCGUAUACUGUAAGUUCAUUAUUGAGACACUACAGUAUAGAUGAUGUACUAUCCAGGGGGUCAACGAGCCUCUGACGGUUU
Get precursor sequence
Structure
        10          20        30        40        50          
CUUGAUUGUUUUAAUCUU--|      A  C  G        G         A  UCAUUA 
                    GCUCUCU GA AG AUAUCAUC UAUACUGUA GU      \
                    UGGGGGA CU UC UGUAGUAG AUAUGACAU CA      U
UUUGGCAGUCUCCGAGCAAC^      C  A  A        -         -  CAGAGU 
       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-144-v2_5p*
mirBase accessionMIMAT0031975
Sequence 
0- GGAUAUCAUCGUAUACUGUAAGU -23
Get sequence
Mature sequence

Dre-Mir-144-v2_3p
mirBase accessionMIMAT0001841
Sequence 
37- CUACAGUAUAGAUGAUGUACUA -59
Get sequence
Proposed targets TargetScanFish: dre-miR-144