Mir-144

MirGeneDB ID

Pma-Mir-144

Family name

MIR-144 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-144

Paralogues

Orthologues

Aca-Mir-144-v1 Ami-Mir-144 Bta-Mir-144-v1 Cfa-Mir-144-v1 Cja-Mir-144-v1 Cli-Mir-144-v1 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v1 Dno-Mir-144 Dre-Mir-144-v1 Ebu-Mir-144-v1 Eca-Mir-144-v1 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gmo-Mir-144-v1 Hsa-Mir-144-v1 Laf-Mir-144 Lch-Mir-144 Loc-Mir-144-v1 Mal-Mir-144-v1 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Mmu-Mir-144-v1 Mun-Mir-144-v1 Neu-Mir-144-v1 Oan-Mir-144 Ocu-Mir-144-v1 Pab-Mir-144-v1 Pbv-Mir-144 Rno-Mir-144-v1 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Tni-Mir-144 Xla-Mir-144-P1-v1 Xla-Mir-144-P2-v1 Xtr-Mir-144

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046106.1: 1186823-1186882 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-144)

Mir-451 NC_046106.1: 1186079-1186120 [-] UCSC Ensembl
Mir-144 NC_046106.1: 1186823-1186882 [-] UCSC Ensembl

Seed

ACAGUAU

Precursor
(pre-Mir +30nt flank)

AGCGGGAUUUCUCGACUAGCACGUCUGUGCAGGAUAUCAUACUAUACUGUAAAUCAAUGCUGAACCAUUACAGUAUAUAUGAUGUGCUGCGGAGGGCUAUGUCCUUGUCUGCAUCUGCGU

Get precursor sequence

Structure

        10             20        30        40        50          
AGCGGGAUUUCUCGACU-----|  ACG   G     G        C          AUCAAUG 
                      AGC   UCU UGCAG AUAUCAUA UAUACUGUAA       \
                      UCG   GGA GCGUC UGUAGUAU AUAUGACAUU       C
UGCGUCUACGUCUGUUCCUGUA^  ---   G     G        -          ACCAAGU 
.       110       100           90        80         70