Mir-144

MirGeneDB ID

Sha-Mir-144

Family name

MIR-144 (all species)

Seed

ACAGUAU

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-144-v1 Aca-Mir-144-v2 Ami-Mir-144 Bta-Mir-144-v1 Bta-Mir-144-v2 Cfa-Mir-144-v1 Cfa-Mir-144-v2 Cli-Mir-144-v1 Cli-Mir-144-v2 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v1 Cpo-Mir-144-v2 Dno-Mir-144 Dre-Mir-144-v1 Dre-Mir-144-v2 Ebu-Mir-144-v1 Ebu-Mir-144-v2 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gja-Mir-144-v2 Gmo-Mir-144-v1 Gmo-Mir-144-v2 Hsa-Mir-144-v1 Hsa-Mir-144-v2 Lch-Mir-144 Loc-Mir-144-v1 Loc-Mir-144-v2 Mal-Mir-144-v1 Mal-Mir-144-v2 Mdo-Mir-144 Mml-Mir-144 Mmu-Mir-144-v1 Mmu-Mir-144-v2 Mun-Mir-144-v1 Mun-Mir-144-v2 Oan-Mir-144 Ocu-Mir-144-v1 Ocu-Mir-144-v2 Pbv-Mir-144 Pma-Mir-144 Rno-Mir-144-v1 Rno-Mir-144-v2 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Tgu-Mir-144-v2 Tni-Mir-144 Xla-Mir-144-P1-v1 Xla-Mir-144-P1-v2 Xla-Mir-144-P2-v1 Xla-Mir-144-P2-v2 Xtr-Mir-144

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL857001.1: 1655049-1655106 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUGGCUGUGCCCACAUGGCACCCUGGCCAGGAUAUCAUCAUAUACUGUAAGUUUGCAAUGAGACACUACAGUAUAGAUGAUGUACUGGACGGGCCGCCCUGCGCUCCGGACCCAGGC

Get precursor sequence

Structure

        10          20        30        40        50         
UGUGGCUGUGCCCACAU--|  AC    G    G        A         A  UUGCA 
                   GGC  CCUG CCAG AUAUCAUC UAUACUGUA GU     A
                   CCG  GGGC GGUC UGUAGUAG AUAUGACAU CA     U
CGGACCCAGGCCUCGCGUC^  CC    A    A        -         -  CAGAG 
      110       100        90        80         70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-144_5p*

mirBase accession

None

Sequence

0- GGAUAUCAUCAUAUACUGUAAGU -23

Get sequence

Mature sequence

Sha-Mir-144_3p

mirBase accession

None

Sequence

37- UACAGUAUAGAUGAUGUACUG -58

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