MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-144

Family name MIR-144 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-144-v1  Ami-Mir-144  Bta-Mir-144-v1  Cfa-Mir-144-v1  Cja-Mir-144-v1  Cli-Mir-144-v1  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Dno-Mir-144  Dre-Mir-144-v1  Ebu-Mir-144-v1  Eca-Mir-144-v1  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gmo-Mir-144-v1  Hsa-Mir-144-v1  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v1  Mal-Mir-144-v1  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mun-Mir-144-v1  Neu-Mir-144-v1  Oan-Mir-144  Ocu-Mir-144-v1  Pab-Mir-144-v1  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tni-Mir-144  Xla-Mir-144-P1-v1  Xla-Mir-144-P2-v1  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL857001.1: 1655049-1655106 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144)		 Mir-451 GL857001.1: 1654912-1654953 [-] UCSC Ensembl
Mir-144 GL857001.1: 1655049-1655106 [-] UCSC Ensembl
Seed ACAGUAU
Precursor
(pre-Mir +30nt flank)		 
UGUGGCUGUGCCCACAUGGCACCCUGGCCAGGAUAUCAUCAUAUACUGUAAGUUUGCAAUGAGACACUACAGUAUAGAUGAUGUACUGGACGGGCCGCCCUGCGCUCCGGACCCAGGC
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Structure
        10          20        30        40        50         
UGUGGCUGUGCCCACAU--|  AC    G    G        A         A  UUGCA 
                   GGC  CCUG CCAG AUAUCAUC UAUACUGUA GU     A
                   CCG  GGGC GGUC UGUAGUAG AUAUGACAU CA     U
CGGACCCAGGCCUCGCGUC^  CC    A    A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-144_5p*
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Mature sequence

Sha-Mir-144_3p
mirBase accessionNone
Sequence 
37- UACAGUAUAGAUGAUGUACUG -58
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