MirGeneDB ID | Sto-Mir-144 |
Family name |
MIR-144 (all species) |
Seed |
GAUAUCA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
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Paralogues |
|
Orthologues |
Aca-Mir-144-v1
Aca-Mir-144-v2
Ami-Mir-144
Bta-Mir-144-v1
Bta-Mir-144-v2
Cfa-Mir-144-v1
Cfa-Mir-144-v2
Cli-Mir-144-v1
Cli-Mir-144-v2
Cmi-Mir-144
Cpi-Mir-144
Cpo-Mir-144-v1
Cpo-Mir-144-v2
Dno-Mir-144
Dre-Mir-144-v1
Dre-Mir-144-v2
Ebu-Mir-144-v1
Ebu-Mir-144-v2
Ete-Mir-144
Gga-Mir-144
Gja-Mir-144-v1
Gja-Mir-144-v2
Gmo-Mir-144-v1
Gmo-Mir-144-v2
Hsa-Mir-144-v1
Hsa-Mir-144-v2
Lch-Mir-144
Loc-Mir-144-v1
Loc-Mir-144-v2
Mal-Mir-144-v1
Mal-Mir-144-v2
Mdo-Mir-144
Mml-Mir-144
Mmu-Mir-144-v1
Mmu-Mir-144-v2
Mun-Mir-144-v1
Mun-Mir-144-v2
Oan-Mir-144
Ocu-Mir-144-v1
Ocu-Mir-144-v2
Pbv-Mir-144
Pma-Mir-144
Rno-Mir-144-v1
Rno-Mir-144-v2
Sha-Mir-144
Spt-Mir-144
Tgu-Mir-144-v1
Tgu-Mir-144-v2
Tni-Mir-144
Xla-Mir-144-P1-v1
Xla-Mir-144-P1-v2
Xla-Mir-144-P2-v1
Xla-Mir-144-P2-v2
Xtr-Mir-144
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01023372.1: 8747-8805 [+]
|
Precursor (pre-Mir +30nt flank) |
AGAAUGAAGAGCUGCCUUUGGCUCUGGCUAGGAUAUCAUCAUAUACUGUAAGUUCACUAUUAAUGUACUACAGUAUAGAUGAUGUACUAUUCAGUGCUCGCUUACAUAACCAACACAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAUGAAGAGCUGCCUUU--| U GC G A A UCACUA
GGC CUG UAG AUAUCAUC UAUACUGUA GU \
UCG GAC AUC UGUAGUAG AUAUGACAU CA U
GAACACAACCAAUACAUUCGC^ U UU A - - UGUAAU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms that corresponds to the isomirs in other taxa where the 3p arm is highly expressed. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
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Mature sequence |
Sto-Mir-144_5p |
mirBase accession | None |
Sequence |
0- GGAUAUCAUCAUAUACUGUAAGU -23
Get sequence
|
Star sequence |
Sto-Mir-144_3p* |
mirBase accession | None |
Sequence |
37- CUACAGUAUAGAUGAUGUACUA -59
Get sequence
|