MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-144

Family name MIR-144 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-144
Paralogues Rno-Mir-144-v1 
Orthologues Ami-Mir-144  Cmi-Mir-144  Cpi-Mir-144  Dno-Mir-144  Ete-Mir-144  Gga-Mir-144  Laf-Mir-144  Lch-Mir-144  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Oan-Mir-144  Pbv-Mir-144  Pma-Mir-144  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr10: 65291378-65291435 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-451 chr10: 65291218-65291259 [-] UCSC Ensembl
Mir-144-v1 chr10: 65291378-65291435 [-] UCSC Ensembl
Mir-144-v2 chr10: 65291378-65291435 [-] UCSC Ensembl
Variant

Rno-Mir-144-v2
Seed GAUAUCA
Precursor
(pre-Mir +30nt flank)		 
GCUGCUCCUCCUCCUCCAGGGCCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGUACCCCAAGACUAGAGCCUGCCU
Get precursor sequence
Structure
        10        20          30        40        50         
GCUGCUCCUCCUCCUCCA   --|  U      G        A         A  UUGUG 
                  GGG  CCU GGCUGG AUAUCAUC UAUACUGUA GU     A
                  CCC  GGG CUGAUC UGUAGUAG AUAUGACAU CA     U
UCCGUCCGAGAUCAGAAC   AU^  U      A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-144-v2_5p
mirBase accessionMIMAT0017130
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
Get sequence
Proposed targets TargetScanVert: rno-miR-144-5p
miRDB: MIMAT0017130
Star sequence

Rno-Mir-144-v2_3p*
mirBase accessionMIMAT0000850
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
Get sequence
Proposed targets microrna.org: MIMAT0000850
TargetScanVert: rno-miR-144-3p
miRDB: MIMAT0000850
Variant

Rno-Mir-144-v1
Seed GAUAUCA
Precursor
(pre-Mir +30nt flank)		 
GCUGCUCCUCCUCCUCCAGGGCCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGUACCCCAAGACUAGAGCCUGCCU
Get precursor sequence
Structure
        10        20          30        40        50         
GCUGCUCCUCCUCCUCCA   --|  U      G        A         AGUUUGUG 
                  GGG  CCU GGCUGG AUAUCAUC UAUACUGUA        \
                  CCC  GGG CUGAUC UGUAGUAG AUAUGACAU        A
UCCGUCCGAGAUCAGAAC   AU^  U      A        -         CACAGAGU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-144-v1_5p
mirBase accessionMIMAT0017130
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
Get sequence
Proposed targets TargetScanVert: rno-miR-144-5p
miRDB: MIMAT0017130
Co-mature sequence

Rno-Mir-144-v1_3p
mirBase accessionMIMAT0000850
Sequence 
37- UACAGUAUAGAUGAUGUACUA -58
Get sequence
Proposed targets microrna.org: MIMAT0000850
TargetScanVert: rno-miR-144-3p
miRDB: MIMAT0000850