MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-22-o1b

Family name MIR-22 (all species)
Seed CAGCUCC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4868b
Paralogues Bfl-Mir-22-o1a  Bfl-Mir-22-o1c  Bfl-Mir-22-o3d  Bfl-Mir-22-o3e  Bfl-Mir-22-P1 
Orthologues Aca-Mir-22-P1b  Ami-Mir-22-P1b  Bla-Mir-22-o1b  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cgi-Mir-22-P1  Cli-Mir-22-P1b  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Hsa-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Loc-Mir-22-P1b  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mml-Mir-22-P1b  Mmu-Mir-22-P1b  Mun-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ovu-Mir-22-P1  Pbv-Mir-22-P1b  Pfl-Mir-22-P1  Rno-Mir-22-P1b  Sha-Mir-22-P1b  Sme-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4  Xtr-Mir-22-P1b 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049981.1: 9942475-9942534 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-22-o1b)
Mir-22-o1b NC_049981.1: 9942475-9942534 [-] UCSC
Mir-22-o1a NC_049981.1: 9953158-9953217 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUUUCACCUAUGGUAAGCGUGUCGGCUUCCCUCAUCACACCGGAAGCUGUUACGUCACUUCCGCUGUAUCAGCUCCAGCUGUGAUGAGUGAAGGGGCAUGCACAGAACAACAGUACAACG
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Structure
        10           20        30        40         50         
GUUUCACCUAUGGUAAG---|     GG    C         CC-   A    U  CGUCAC 
                    CGUGUC  CUUC CUCAUCACA   GGA GCUG UA      U
                    GUACGG  GAAG GAGUAGUGU   CCU CGAC AU      U
GCAACAUGACAACAAGACAC^     G-    U         CGA   -    U  GUCGCC 
.       110       100         90        80         70        60
Deep sequencing
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CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o2 gene in ambulacrarians.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bfl-Mir-22-o1b_5p* (predicted)

mirBase accessionNone
Sequence
0- CUCAUCACACCGGAAGCUGUUA -22
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Mature sequence

Bfl-Mir-22-o1b_3p

mirBase accessionMIMAT0020105
Sequence
38- UCAGCUCCAGCUGUGAUGAGUG -60
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