MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-22-o1a

Family name MIR-22 (all species)
Seed CAGCUCC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4868a
Paralogues Bfl-Mir-22-o1b  Bfl-Mir-22-o1c  Bfl-Mir-22-o3d  Bfl-Mir-22-o3e  Bfl-Mir-22-P1 
Orthologues Bla-Mir-22-o1a  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cgi-Mir-22-P1  Cmi-Mir-22-P1a  Cte-Mir-22-P1  Dre-Mir-22-P1a  Esc-Mir-22-P1  Gmo-Mir-22-P1a  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lgi-Mir-22-P1  Loc-Mir-22-P1a  Mal-Mir-22-P1a  Npo-Mir-22-P1  Obi-Mir-22-P1  Ovu-Mir-22-P1  Pfl-Mir-22-P1  Sme-Mir-22-P1  Sto-Mir-22-P1a  Tni-Mir-22-P1a 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049981.1: 9953158-9953217 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-22-o1a)
Mir-22-o1b NC_049981.1: 9942475-9942534 [-] UCSC
Mir-22-o1a NC_049981.1: 9953158-9953217 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGAUUGAGAAAUGAUGUGGUCUUCUCGCCCCUGAUCAGCCCGGAAGCUGUUACGUCACUUCCGUUGUAUCAGCUCCAGCGCUGAUCAGUGACGCGGUGACUUAAAAACAACUACGCCAGG
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Structure
        10          20        30          40         50         
AGAUUGAGAAAUGAUGU--    UU U   CC--         CC-|  A    U  CGUCAC 
                   GGUC  C CGC    CUGAUCAGC   GGA GCUG UA      U
                   UCAG  G GCG    GACUAGUCG   CCU CGAC AU      U
GGACCGCAUCAACAAAAAU    U- -   CAGU         CGA^  -    U  GUUGCC 
.       110       100          90        80         70        60
Deep sequencing
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CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o2 gene in ambulacrarians.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bfl-Mir-22-o1a_5p* (predicted)

mirBase accessionNone
Sequence
0- CUGAUCAGCCCGGAAGCUGUUA -22
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Mature sequence

Bfl-Mir-22-o1a_3p

mirBase accessionMIMAT0020104
Sequence
38- UCAGCUCCAGCGCUGAUCAGUG -60
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