MirGeneDB ID | Bfl-Mir-22-o1c |
Family name |
MIR-22 (all species) |
Seed |
CAGCUCC |
Species |
Florida lancelet (Branchiostoma floridae) |
MiRBase ID |
bfl-mir-4868c
|
Paralogues |
Bfl-Mir-22-o1a
Bfl-Mir-22-o1b
Bfl-Mir-22-o3d
Bfl-Mir-22-o3e
Bfl-Mir-22-P1
|
Orthologues |
Bla-Mir-22-o1c
Bla-Mir-22-P1
Bpl-Mir-22-P1
Cgi-Mir-22-P1
Cte-Mir-22-P1
Efe-Mir-22-P1c
Esc-Mir-22-P1
Lan-Mir-22-P1
Lgi-Mir-22-P1
Npo-Mir-22-P1
Obi-Mir-22-P1
Ovu-Mir-22-P1
Pfl-Mir-22-P1
Sme-Mir-22-P1
|
Node of Origin (locus) |
Branchiostoma
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049994.1: 9332985-9333043 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UGCUGAUGAUGUGUACUGCUCAUGUCAGUACUGGUGAGUCUGGAUGCUGAUGAUAUGUUAGUUCCCAUCAGCUCCAAGGCUGAUCAGUAGUGAUGUGAGAUCUACUCGACGUUGUAUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCUGAUGAUGUGUACUG-- G G -| U AUAUGU
CUCAUGUCA UACUGGU AGUC UGGA GCUGAUG \
GAGUGUAGU AUGACUA UCGG ACCU CGACUAC U
CUUAUGUUGCAGCUCAUCUA G G A^ - CCUUGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o2 gene in ambulacrarians. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bfl-Mir-22-o1c_5p* |
mirBase accession | MIMAT0020106 |
Sequence |
0- CUGGUGAGUCUGGAUGCUGAUG -22
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|
Mature sequence |
Bfl-Mir-22-o1c_3p |
mirBase accession | MIMAT0020107 |
Sequence |
37- UCAGCUCCAAGGCUGAUCAGUA -59
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|