MirGeneDB 2.1
MirGeneDB ID

Bla-Mir-22-o1c

Family name MIR-22 (all species)
Seed UGGUGAG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-22-o1a  Bla-Mir-22-o1b  Bla-Mir-22-o3a1a  Bla-Mir-22-o3a1b  Bla-Mir-22-o3a1c  Bla-Mir-22-o3a1d  Bla-Mir-22-o3a2a  Bla-Mir-22-o3a2b  Bla-Mir-22-o3a3  Bla-Mir-22-o3b1  Bla-Mir-22-o3b2  Bla-Mir-22-o3b3  Bla-Mir-22-o3c1  Bla-Mir-22-o3c2  Bla-Mir-22-P1 
Orthologues Bfl-Mir-22-o1c  Bfl-Mir-22-P1  Bpl-Mir-22-P1  Cgi-Mir-22-P1  Cte-Mir-22-P1  Efe-Mir-22-P1c  Esc-Mir-22-P1  Lan-Mir-22-P1  Lgi-Mir-22-P1  Npo-Mir-22-P1  Obi-Mir-22-P1  Ovu-Mir-22-P1  Pfl-Mir-22-P1  Sme-Mir-22-P1 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000000: 3202474-3202532 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAUGGUGACUGUACUGCUCAUGUCAGUACUGGUGAGUCUGGUUGCUGGUGAUGUUUUAGAUGCCAUCAGCUCCAAGGCUGAUCAGUACUGAUGCGAGAUCUGCUCGACAUUGUAUUU
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Structure
        10          20        30        40         50         
CUGAUGGUGACUGUACUG--   AU            G    -|  UU       AUGUUU 
                    CUC  GUCAGUACUGGU AGUC UGG  GCUGGUG      \
                    GAG  UAGUCAUGACUA UCGG ACC  CGACUAC      U
UUUAUGUUACAGCUCGUCUA   CG            G    A^  U-       CGUAGA 
       110       100        90        80         70        60
Deep sequencing
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CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o2 gene in ambulacrarians.
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Mature sequence

Bla-Mir-22-o1c_5p
mirBase accessionNone
Sequence 
0- CUGGUGAGUCUGGUUGCUGGUG -22
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Star sequence

Bla-Mir-22-o1c_3p* (predicted)
mirBase accessionNone
Sequence 
37- UCAGCUCCAAGGCUGAUCAGUA -59
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