MirGeneDB 2.1
MirGeneDB ID

Bla-Mir-22-o1a

Family name MIR-22 (all species)
Seed UGAUCAG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-22-o1b  Bla-Mir-22-o1c  Bla-Mir-22-o3a1a  Bla-Mir-22-o3a1b  Bla-Mir-22-o3a1c  Bla-Mir-22-o3a1d  Bla-Mir-22-o3a2a  Bla-Mir-22-o3a2b  Bla-Mir-22-o3a3  Bla-Mir-22-o3b1  Bla-Mir-22-o3b2  Bla-Mir-22-o3b3  Bla-Mir-22-o3c1  Bla-Mir-22-o3c2  Bla-Mir-22-P1 
Orthologues Bfl-Mir-22-o1a  Bfl-Mir-22-P1  Bpl-Mir-22-P1  Cgi-Mir-22-P1  Cmi-Mir-22-P1a  Cte-Mir-22-P1  Dre-Mir-22-P1a  Esc-Mir-22-P1  Gmo-Mir-22-P1a  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lgi-Mir-22-P1  Loc-Mir-22-P1a  Mal-Mir-22-P1a  Npo-Mir-22-P1  Obi-Mir-22-P1  Ovu-Mir-22-P1  Pfl-Mir-22-P1  Sme-Mir-22-P1  Sto-Mir-22-P1a  Tni-Mir-22-P1a 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000017: 1361498-1361557 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAAGUAAGCAAAUCUGGUCUUCUCGUCCCUGAUCAGCCCGGAAGCUGUUACGUCACUUCCGCUGUAUCAGCUCCAGCGCUGAUCAGUGACGCGAUGACUUAUAAUCAACUACGUCAGA
Get precursor sequence
Structure
        10          20        30        40         50         
CAGAAGUAAGCAAAUCU--    U  U    C         CC-|  A    U  CGUCAC 
                   GGUC UC CGUC CUGAUCAGC   GGA GCUG UA      U
                   UCAG AG GCAG GACUAGUCG   CCU CGAC AU      U
AGACUGCAUCAACUAAUAU    U  C    U         CGA^  -    U  GUCGCC 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o2 gene in ambulacrarians.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-22-o1a_5p
mirBase accessionNone
Sequence 
0- CUGAUCAGCCCGGAAGCUGUUA -22
Get sequence
Co-mature sequence

Bla-Mir-22-o1a_3p
mirBase accessionNone
Sequence 
38- UCAGCUCCAGCGCUGAUCAGUG -60
Get sequence