MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-10-P1d3

Family name MIR-10 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P2c4  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1d-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) X. laevis
Node of Origin (family) Eumetazoa
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 148240764-148240820 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d3-v2)		 Mir-10-P1d3-v1 NC_030726.1: 148240763-148240821 [-] UCSC Ensembl
Mir-10-P1d3-v2 NC_030726.1: 148240764-148240820 [-] UCSC Ensembl
Variant

Xla-Mir-10-P1d3-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
UAGCAGAUACCAUAAGAGGCGCUUAUAUGCACCCUGUAGAAUCGAAUUUGUGUGAGUUCUGAGCCACAGAUUCGUCUCUAGGGGGGUAUAUGGGUGAUGCUACAGACUUCUCUCUAG
Get precursor sequence
Structure
        10          20        30        40        50        
UAGCAGAUACCAUAAGAGG--|          A    G    AU          UGAGU 
                     CGCUUAUAUGC CCCU UAGA  CGAAUUUGUG     U
                     GUGGGUAUAUG GGGG AUCU  GCUUAGACAC     C
GAUCUCUCUUCAGACAUCGUA^          -    G    CU          CGAGU 
     110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-10-P1d3-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAAUCGAAUUUGUGU -23
Get sequence
Star sequence

Xla-Mir-10-P1d3-v2_3p*
mirBase accessionNone
Sequence 
35- ACAGAUUCGUCUCUAGGGGGGU -57
Get sequence
Variant

Xla-Mir-10-P1d3-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
CUAGCAGAUACCAUAAGAGGCGCUUAUAUGCACCCUGUAGAAUCGAAUUUGUGUGAGUUCUGAGCCACAGAUUCGUCUCUAGGGGGGUAUAUGGGUGAUGCUACAGACUUCUCUCUAGC
Get precursor sequence
Structure
        10        20          30        40        50         
CUAGCAGAUACCAUAAGAGG--|          A    G    AU          UGAGU 
                      CGCUUAUAUGC CCCU UAGA  CGAAUUUGUG     U
                      GUGGGUAUAUG GGGG AUCU  GCUUAGACAC     C
CGAUCUCUCUUCAGACAUCGUA^          -    G    CU          CGAGU 
       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-10-P1d3-v1_5p
mirBase accessionNone
Sequence 
0- CACCCUGUAGAAUCGAAUUUGUG -23
Get sequence
Star sequence

Xla-Mir-10-P1d3-v1_3p*
mirBase accessionNone
Sequence 
37- CAGAUUCGUCUCUAGGGGGGUA -59
Get sequence