MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-155

Family name MIR-155 (all species)
Seed UAAUGCU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-155  Ami-Mir-155  Bta-Mir-155  Cfa-Mir-155  Cli-Mir-155  Cmi-Mir-155  Cpi-Mir-155  Cpo-Mir-155  Dno-Mir-155  Dre-Mir-155  Ebu-Mir-155  Ete-Mir-155  Gga-Mir-155  Gja-Mir-155  Gmo-Mir-155  Hsa-Mir-155  Lch-Mir-155  Loc-Mir-155  Mal-Mir-155  Mdo-Mir-155  Mml-Mir-155  Mmu-Mir-155  Mun-Mir-155  Oan-Mir-155  Ocu-Mir-155  Pbv-Mir-155  Pma-Mir-155  Rno-Mir-155  Sha-Mir-155  Spt-Mir-155-P3  Spt-Mir-155-P4  Sto-Mir-155  Tgu-Mir-155  Xla-Mir-155-P1  Xla-Mir-155-P2  Xtr-Mir-155 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
5: 8201365-8201424 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-155)
Mir-92-P1a1 5: 8188110-8188167 [-] UCSC Ensembl
Mir-19-P2a1 5: 8188261-8188319 [-] UCSC Ensembl
Mir-19-P1a1 5: 8188599-8188656 [-] UCSC Ensembl
Mir-17-P2a1 5: 8188734-8188798 [-] UCSC Ensembl
Mir-17-P1a1 5: 8188866-8188926 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUGGAGCUCGUGUCGUCCCGGAUUGGAGUUAAUGCUAAUCGUGAUAGGGGUUGGCGGUUCCCAGGCACCUAGCAUGUUAGCAUUAGCUCCACUCAGGGAGAUCUCGCCACGCCAAGCC
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Structure
        10          20        30        40        50          
UGUUGGAGCUCGUGUCG--|   G  U               U    A    G  UGGCGG 
                   UCCC GA UGGAGUUAAUGCUAA CGUG UAGG GU      \
                   AGGG CU ACCUCGAUUACGAUU GUAC AUCC CG      U
CCGAACCGCACCGCUCUAG^   A  C               -    G    A  GACCCU 
.       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-155_5p

mirBase accessionNone
Sequence
0- UUAAUGCUAAUCGUGAUAGGGGU -23
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Star sequence

Tni-Mir-155_3p*

mirBase accessionNone
Sequence
38- ACCUAGCAUGUUAGCAUUAGCU -60
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