| MirGeneDB ID | Spt-Mir-155-P4 |
|---|---|
| Family name | MIR-155 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-155-P3 |
| Orthologues | Aca-Mir-155 Ami-Mir-155 Bta-Mir-155 Cfa-Mir-155 Cja-Mir-155 Cli-Mir-155 Cmi-Mir-155 Cpi-Mir-155 Cpo-Mir-155 Dno-Mir-155 Dre-Mir-155 Ebu-Mir-155 Eca-Mir-155 Ete-Mir-155 Gga-Mir-155 Gja-Mir-155 Gmo-Mir-155 Hsa-Mir-155 Laf-Mir-155 Lch-Mir-155 Loc-Mir-155 Mal-Mir-155 Mdo-Mir-155 Mml-Mir-155 Mmr-Mir-155 Mmu-Mir-155 Mun-Mir-155 Neu-Mir-155 Oan-Mir-155 Ocu-Mir-155 Pab-Mir-155 Pbv-Mir-155 Pma-Mir-155 Rno-Mir-155 Sha-Mir-155 Sto-Mir-155 Tgu-Mir-155 Tni-Mir-155 Xtr-Mir-155 |
| Node of Origin (locus) | S. punctatus |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01003112.1: 1961972-1962032 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-155-P4) |
Mir-155-P4
QEPC01003112.1: 1961972-1962032 [-]
UCSC
Ensembl
Mir-155-P3 QEPC01003112.1: 1983209-1983269 [+] UCSC Ensembl |
| Seed | UAAUGCU |
| Precursor (pre-Mir +30nt flank) |
CUCUGGAGAACAUCUGUAGGUUGUACGUUGUUAAUGCUAAUCGUGAUAGGGGUUUUUAUUUUUAACUGACUCCUACAUAUUAGCAUUAGCACUGUAUGAUGCCUCUUACCAGAAUUCACAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUCUGGAGAACAUCUGUAG--| UG U C A UUUAUU GU UACG UGUUAAUGCUAAU GUG UAGGGGUU \ UA AUGU ACGAUUACGAUUA UAC AUCCUCAG U UACACUUAAGACCAUUCUCCG^ GU C - - UCAAUU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Spt-Mir-155-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUAAUGCUAAUCGUGAUAGGGGUU -24
Get sequence
|
| Star sequence | Spt-Mir-155-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- CUCCUACAUAUUAGCAUUAGCA -61
Get sequence
|
