| MirGeneDB ID | Lch-Mir-155 |
|---|---|
| Family name | MIR-155 (all species) |
| Seed | UAAUGCU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-155 Ami-Mir-155 Bta-Mir-155 Cfa-Mir-155 Cli-Mir-155 Cmi-Mir-155 Cpi-Mir-155 Cpo-Mir-155 Dno-Mir-155 Dre-Mir-155 Ebu-Mir-155 Ete-Mir-155 Gga-Mir-155 Gja-Mir-155 Gmo-Mir-155 Hsa-Mir-155 Loc-Mir-155 Mal-Mir-155 Mdo-Mir-155 Mml-Mir-155 Mmu-Mir-155 Mun-Mir-155 Oan-Mir-155 Ocu-Mir-155 Pbv-Mir-155 Pma-Mir-155 Rno-Mir-155 Sha-Mir-155 Spt-Mir-155-P3 Spt-Mir-155-P4 Sto-Mir-155 Tgu-Mir-155 Tni-Mir-155 Xla-Mir-155-P1 Xla-Mir-155-P2 Xtr-Mir-155 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127824.1: 363037-363097 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CACCGGAGGUCGCUUGUGGCCUGUACGUUGCUAAUGCUAAUUGUGAUAGGGGUUUUUGACUUUAGCUAACUCCUACAUAUUAGCAUUAAUACUGUAUAUGAUGCCUCUUACCAGAAUUUGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 CACCGGAGGUCGCUUGUGGCC--| U C U A UUUGAC UGUACG UG UAAUGCUAAU GUG UAGGGGUU \ AUAUGU AU AUUACGAUUA UAC AUCCUCAA U CGUUUAAGACCAUUCUCCGUAGU^ C A - - UCGAUU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Lch-Mir-155_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CUAAUGCUAAUUGUGAUAGGGGUU -24
Get sequence
|
| Star sequence | Lch-Mir-155_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- CUCCUACAUAUUAGCAUUAAUA -61
Get sequence
|
