MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-155-P3

Family name MIR-155 (all species)
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-155-P4 
Orthologues Aca-Mir-155  Ami-Mir-155  Bta-Mir-155  Cfa-Mir-155  Cja-Mir-155  Cli-Mir-155  Cmi-Mir-155  Cpi-Mir-155  Cpo-Mir-155  Dno-Mir-155  Dre-Mir-155  Ebu-Mir-155  Eca-Mir-155  Ete-Mir-155  Gga-Mir-155  Gja-Mir-155  Gmo-Mir-155  Hsa-Mir-155  Laf-Mir-155  Lch-Mir-155  Loc-Mir-155  Mal-Mir-155  Mdo-Mir-155  Mml-Mir-155  Mmr-Mir-155  Mmu-Mir-155  Mun-Mir-155  Neu-Mir-155  Oan-Mir-155  Ocu-Mir-155  Pab-Mir-155  Pbv-Mir-155  Pma-Mir-155  Rno-Mir-155  Sha-Mir-155  Sto-Mir-155  Tgu-Mir-155  Tni-Mir-155  Xtr-Mir-155 
Node of Origin (locus) S. punctatus
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01003112.1: 1983209-1983269 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-155-P3)
Mir-155-P4 QEPC01003112.1: 1961972-1962032 [-] UCSC Ensembl
Mir-155-P3 QEPC01003112.1: 1983209-1983269 [+] UCSC Ensembl
Seed UAAUGCU
Precursor
(pre-Mir +30nt flank)
CUCUGGAGAACAUCUGUAGGUUGUACGUUGUUAAUGCUAAUCGUGAUAGGGGUUUUUAUUUUUAACUGACUCCUACAUAUUAGCAUUAGCACUGUAUGAUGCCUCUUACCAGAAUUCACAU
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Structure
        10          20        30        40        50        60 
CUCUGGAGAACAUCUGUAG--| UG    U             C   A        UUUAUU 
                     GU  UACG UGUUAAUGCUAAU GUG UAGGGGUU      \
                     UA  AUGU ACGAUUACGAUUA UAC AUCCUCAG      U
UACACUUAAGACCAUUCUCCG^ GU    C             -   -        UCAAUU 
 .       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-155-P3_5p (predicted)

mirBase accessionNone
Sequence
0- UUAAUGCUAAUCGUGAUAGGGGUU -24
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Star sequence

Spt-Mir-155-P3_3p* (predicted)

mirBase accessionNone
Sequence
39- CUCCUACAUAUUAGCAUUAGCA -61
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